Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015909022.1_cds_XP_016459294.1_52835
CDS Infomation

[gene=LOC107782865] [db_xref=GeneID:107782865] [protein=TPR and ankyrin repeat-containing protein 1-like] [frame=2] [partial=5'] [protein_id=XP_016459294.1] [location=complement(join(5896..6270,6398..6739,7919..>8996))] [gbkey=CDS]
Sequence

ACTGGTAGTGATACACCAGAAACCAATGTGGTTGTGGTTGATGATTCTGATGGGATACCA
AACTCTTTCACTGGCATCCCAGAGGAAGATTATCCTCTAGTGCTTACGTTTGAAAAGTTC
TTGCTGATGCTCGATGGAACGATAGGCGTTTCCTACTTCGAGAGATTCGAGAGAGATGGC
GAGATCAGCTATGACCGTTTCTGTAATTGGTATTGGCCTCACTTCAACAGTCAATTGACC
AAGAAACTTGATCCCTCAAGAGTTTTTAGTGAAATAATTTGTCAAATAAAAGGAGGGCTG
ATAATTGGAGATAATGGAAAACTGAGCAAAAATGAATATACTTCAATGTCTGAATATAGG
GCCTCGACAATAGGTGCTGAAGTAAGAGAGGAAATATACCATATTTTCCAGAATTATGAG
AAGATGAAACTGGAGCGTGGTGAATATGATTTATCAGATTTCGTTAATGATATTCATATT
CGACTGAAGAATCAGCATCAGCACTACCTAGTAGATTTTGTCTATGTGGATGAAGTTCAA
GATCTCCCACTGAGACATATAGGTCTTCTCAAATATGTTTGTAGAAATGTCGACGAAGGC
TTTGTTTTCTCGGGGGATACAGCACAGACAATTGGTAGAAGAGAAGATTTTAGATTCGAA
GACGTTCGCAATCTATTCTACAAGGAGTTCATCAACAGAAAAGAAAAAGGACATGTCTCA
CCTCTTTTTAAGTTGACTCAGAACTTCCGGACACATAGCAGTGTACTCCGTTTGGCACAG
AGTGTAATCACTCTGCTTCATTATTACTTCCCTCAGTCTATTGATATCTTGGAATCTGAG
ACAAGTGTTACATGTGGTGTGGCTCCAGTGTTGCTCAAGCCTATGCCTGGAGCTGATGAA
AATGCAATTATAACTATTTTTGGAAATAGTGAGAGTACTGGGGGAAAAATAATAGGTTTT
GGTGCAGAGCAGGTCATATTAGTGCGTGATGAGTCTGCGAAGAAGGAAGTCTCCAATTAT
ATTGGAAGGAAAGCTCTTATTTTGACTATTGCTGAATCCAAAGGCTTGGAGTTTCAGGAT
GTACTGCTGTACAATTTTTTTGAGTCGTCGCCACTTAGAAATCAGTGGAGAGTGATCTAT
AAGTTCCTGAATGAACGAGGCGCACAGGTTTTGTCATTCCCAAGTTTCTCTGTAGAAAGA
CACAGTGTCTTGTGTTCTGAACTAAAGCAGCTTTATGTTGCTATCACCCGAACAAGGCAA
AAGTTATGGATTTGTGAAAGTTCAGAAGAATACTCTGAACCCATGTTTGACTACCGGAGA
AGGTCAAAACTAGTGCAAACATGGGAGATAGATGATTCACTTGCACACGCTATGCAAACT
TCGAGCACGCCGGAGGAGTGGAAGTCACAGGGAATGAAGCTATTGTTGGACAAAAAATAT
GATATGGCACTCCTGTGCTTTGAAAAAGAAGGAGAAAAGAATTTGGCGGAAAGGGCAAAG
GCAGAGCTATTCAGTTTAGATGCCGAGCGAGTTCGTGATTCGAACCCGGAAGAGGCTCGC
ACCTACCTACGTAAGGCTGCTGAAATATTCTATTCCATTGGAATACTTATATCAGCTGCA
GAGTGTTTTTATTACTCGAGAGACTTTGAACAAGCAGGTAATGAAAAGTTGCCTCACTTT
GTTAAGAGTTCCGTTCTTGTTGTTCATTTTCTTTCCCTCTTCGATTCCGTACTTTCTAGC
ATTTTAAATATAGTTCAGCATTTCCATTTCTTAAGGACTTACATCCAGTTTTGA

Peptide Sequence

PEP ID

XP_016459294.1
PEP Infomation

PREDICTED: TPR and ankyrin repeat-containing protein 1-like, partial [Nicotiana tabacum]
Sequence

TGSDTPETNVVVVDDSDGIPNSFTGIPEEDYPLVLTFEKFLLMLDGTIGVSYFERFERDG
EISYDRFCNWYWPHFNSQLTKKLDPSRVFSEIICQIKGGLIIGDNGKLSKNEYTSMSEYR
ASTIGAEVREEIYHIFQNYEKMKLERGEYDLSDFVNDIHIRLKNQHQHYLVDFVYVDEVQ
DLPLRHIGLLKYVCRNVDEGFVFSGDTAQTIGRREDFRFEDVRNLFYKEFINRKEKGHVS
PLFKLTQNFRTHSSVLRLAQSVITLLHYYFPQSIDILESETSVTCGVAPVLLKPMPGADE
NAIITIFGNSESTGGKIIGFGAEQVILVRDESAKKEVSNYIGRKALILTIAESKGLEFQD
VLLYNFFESSPLRNQWRVIYKFLNERGAQVLSFPSFSVERHSVLCSELKQLYVAITRTRQ
KLWICESSEEYSEPMFDYRRRSKLVQTWEIDDSLAHAMQTSSTPEEWKSQGMKLLLDKKY
DMALLCFEKEGEKNLAERAKAELFSLDAERVRDSNPEEARTYLRKAAEIFYSIGILISAA
ECFYYSRDFEQAGNEKLPHFVKSSVLVVHFLSLFDSVLSSILNIVQHFHFLRTYIQF

Transcript Sequence

Gene sequence data has not been registered.